Scaffold Ga0315275_10028050

Overview

Basic Information

• Taxon OID: 3300032401
• Scaffold ID: Ga0315275_10028050
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5870
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5111
  • Long. (^o): -110.3555
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034904	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315275_100280501	F034904	N/A	GKSWPAPSDNMRKTLAQAKNSTIPQAVGLATCDERFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIESMNLCGYNIPIQNQWYEFQTDTRAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLSADVGKRVLLQGLDPNGIPIRTLDSVTGEYVWGEYVTLPNPSITAYVQTSNRFKQPGLTGAQKPLTQGSLTIIAENDTTGLLTQVAVWGPSEQNPEYRRTYLIGMPEVCGGANSCSTTQDNCCIDNGDGCVPADETCTNTVVEAIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNDRSVINVQPFGSAKIQFRFGGFI