Scaffold Ga0315275_10024948

Overview

Basic Information

• Taxon OID: 3300032401
• Scaffold ID: Ga0315275_10024948
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6196
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5111
  • Long. (^o): -110.3555
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F093769	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315275_100249481	F093769	N/A	MSNQSLNELDLLLGLPKPVEEMTDKELERFLLQHFPHTRPTGTDLASLLNDPLLKGIDV
Ga0315275_100249482	F043895	N/A	MKSLMLAITIFATETTLIALHQDFEAKLRAISQIESNDNDKAKGRHGELSRYQIKRAVWRQHFPDEKDMRHVPAEARRCAKAHLCWLELKLCLAQGTKHPNPRDVYAAWNIGLTAYARRDYTLAKLPSTIRQRADRFTNLYEDYRNHQ
Ga0315275_100249485	F037195	N/A	MNIFTTKFSDPPQHDPVDLMKQADHLLNKTERKQGWPYYDLKHAIQFAQMVVKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFLVDKGAGILRGQIHEDDIPLVSELSEKVQISVRKVNLIIELVEPVDNILDAMTPLMGGSDEDPFTFNEEIFRDQIAEFMNSGEIGSQASWQNYTSSAEKYARQLALQDNTILIETTPTELIVMKMSEEMLKGLE