NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1065946

Scaffold Ga0325405_1065946


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1065946 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1735
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002024Metagenome603Y
F029605Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_10659461F029605N/AMEIIKHKSXNNRVKLLIILTYSITNYKLNSTLTIIIQQIIQLFWQHNNKIYSKNSKKHSRLTIKINGNI
Ga0325405_10659462F029605N/AMEIIKHKSRNSRVKLLIIPTYSITNYKVNSTLTIIIQQIILLFWQDNNKIYSINSKKHFRLTIKINGNN
Ga0325405_10659463F002024N/AMEIIKYKSCNNRVKLLIIPTYSVTNYNLNSTLTITIQQII
Ga0325405_10659464F029605N/AMEIIKYKSCNNRVRFLIIPIYSITNYELNSTLTITIQQIIQLLWQHNNKIYSITSKQKNSRLTIKINQNN
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