Scaffold Ga0325405_1005440

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1005440
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12950
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix → Salix purpurea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005804	Metagenome	389	Y
F010370	Metagenome	304	Y
F065270	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_10054405	F005804	N/A	VPIGPITRARAKKLKEALNGLVQNIWSKMDLEGLGKFKEYEGQPLIHLVQVQEEPNSCGTRG
Ga0325405_10054406	F065270	GAG	MIRFDILTQKRYESDLVRPEFETQSKRYPIDPKFDMWCD
Ga0325405_10054407	F010370	N/A	MKKNETTPRYVGYDENKLQEMKTIESKRISKVDAKQTRLRRVKSESGT