Scaffold Ga0325405_1001437

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1001437
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24125
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002798	Metagenome	529	Y
F037802	Metagenome	167	Y
F063214	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_100143716	F037802	GAG	MLCVNGKVDESEQIRLLTFGENSSRRMRELGSGSFLGILVLDD
Ga0325405_100143718	F063214	N/A	MLTTNQVPFIAQVSVIPYNMGYENAKYLLYQVLYNINLD
Ga0325405_100143721	F002798	N/A	MVSVHREDKIQFIKDGLSKGSSDNLLLTLETHPSGDVHRAIHDLWPQFHKEHARHSLGNLTKKDLVCQFLRKLDGKPIPDP