Scaffold Ga0325405_1000856

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1000856
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30000
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (39.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003967	Metagenome	459	Y
F035360	Metagenome	172	Y
F056276	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_100085619	F003967	N/A	MFQNLISRYGSRLRDFLYELQKKTKQTARDKGLQGWNDVAVWRDFKPIYIPTDIWPHYLEHVTSERFTRRSQSGAGNWNQPIHGSVTMHTGSSVPFAAYAKRMVRLI
Ga0325405_100085622	F035360	N/A	VFVVLGDVFYTLSFYLMTLRTMSRFGWGERVVVVDKKKTTNYFFF
Ga0325405_100085626	F056276	N/A	MKIGEEIQRREKEQKIAQIYTDISYYGKLKEPTEVMEYRYPPFDWDERLAKQESHQKETQKQCEKKK