Scaffold Ga0325405_1000751

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1000751
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31768
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016904	Metagenome	243	Y
F034007	Metagenome	175	Y
F035573	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_100075111	F016904	N/A	MLLIKLKDTRIHKQRLKSNLSFLRLSLDDQFIRLMEGSITGMKDCSWSINCSAVAAEIMIYRVEDVRNSYSTA
Ga0325405_100075113	F034007	N/A	MPGTGKSTFAKKRRAKRLKVYHRCARWTCNATCHSLGMVSLNHEDKIQFIKDGLSKGSLDNLLMTLETHPSGDVHRAIHDLWP
Ga0325405_10007516	F035573	GAG	MFCKGNYKVVIIIRFILHQSIVLKILMVDTLLNIEHLLEP