Scaffold Ga0325405_1000330

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1000330
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44929
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002024	Metagenome	603	Y
F027397	Metagenome	194	Y
F029605	Metagenome	187	Y
F046103	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_100033037	F027397	N/A	MVLLNTDGFIQSVKPFVIVFSKFVFKKLFRIYNIKLYKLMVIKTNYANKIYIKHKKQKIKVK
Ga0325405_100033038	F046103	AGGAG	LRERYGDDILTHPEFDPDLWMEVGSSGGPDKNQVYGLSNTTTDNLRSTRSVSTVGSSQSISSSQPKEFVALQQHMTQLTEKYDHLSVEYAQLKTSHAEQRAESAQQKAAYEQLREMVMNMAT
Ga0325405_100033043	F002024	N/A	MEKLKHKSCNNRVKLIIIPTYSITNSMVNSTLTINIQQIN
Ga0325405_10003308	F029605	N/A	MEIIKHKSCNNRVKLLIIPTYSITNSKVNSTLTIIIQQIIQLLWQYNNKIYLKNFKKI