Scaffold Ga0325405_1000108

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1000108
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75452
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (46.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006830	Metagenome	363	Y
F061403	Metagenome	131	Y
F074205	Metagenome	119	Y
F100080	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_10001081	F061403	N/A	YYCRQSIAKFDIKTGVMVYELVKQLSLIIMADLRY
Ga0325405_100010847	F100080	N/A	MNKMEITNHGRGLALTMGLASMHVCVLLGFVEGLCAEIDGFNVCVLLGFIERLCAVIDGF
Ga0325405_100010849	F074205	N/A	MVIFMTKYFIIQCIKKEGASHLPAPPVGCSCLDDGPIPTEPPKTSMVTNQYICIFESYSSPHLFQEFICSNSSVPHFTPSYHEIVTSI
Ga0325405_10001086	F006830	N/A	MDTTLEKLKKYFPTLPPNAIAKIYRARCARLRLLMNHGILEDIRWLIEAKV