Scaffold Ga0325400_1051218

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0325400_1051218

Scaffold Ga0325400_1051218

Overview

Basic Information
Taxon OID	3300032374 Open in IMG/M
Scaffold ID	Ga0325400_1051218 Open in IMG/M
Source Dataset Name	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3377
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	32.1348	Long. (^o)	-81.9657	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074205	Metagenome	119	Y
F100080	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0325400_10512183	F100080	N/A	MNKMEITNHGRGLTLTMGLANMHVCVLLGFVEGLCAEIDGFNVCVLLEFIERLYAAIDGFQCVCSAGT
Ga0325400_10512185	F074205	N/A	MVIFMLKYFIIQRMKKEGASHLPAPPVGCSCLDDGPIPTAPPKTSMVINQYICIFESHSSPHLFQEFICSHSSVPHFTPSYQEIFTSI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.