Scaffold Ga0316204_10383345

Overview

Basic Information

• Taxon OID: 3300032373
• Scaffold ID: Ga0316204_10383345
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1070
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039108	Metagenome	164	N
F052560	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316204_103833454	F052560	GGGGG	MVKDTIGMLVLTAMVITFGTNAITQDYNIWALMVRFGG
Ga0316204_103833455	F039108	N/A	VDEIECPECLGDGWLVYWVGKRGANDPCGSEVQDDCDVCHGSGIIENPDWSG