Scaffold Ga0315334_10303607

Overview

Basic Information

• Taxon OID: 3300032360
• Scaffold ID: Ga0315334_10303607
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1329
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051207	Metagenome / Metatranscriptome	144	Y
F084353	Metagenome / Metatranscriptome	112	N
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315334_103036071	F051207	N/A	ENLYRGKEEAFTYQTPILDFFIRPTEGYDVGDSIPTNKLWVITHTDKLKVRPSLERSIVHFNNGTCFDYVSGSELQVEKDKVIYNPKNNQLEFYPRKLRKPLLSLRVDKVIGGKPSKKLKINFKAKYYDMTHDRLNLFV
Ga0315334_103036072	F103414	N/A	MVSSFIFRAAGFNEIIELLKETNQSLKNVERLLEFTLSPPDLSKYKKGMGLDDIPRMKLSEAGNPSDQA
Ga0315334_103036073	F084353	N/A	MDWKRKKTVIPKCDCSIHDVVSGIIEYLIITPIFAIGYLTVTIPWMLFVIGLDADQFANFVWQSVMVDLVVAYPLAKLVMKLKPRIERISKLGH
Ga0315334_103036074	F001235	N/A	GKKLWDKHQADEYTHVDNYKEAICINCFSKDATAATIVDICGECAGKRGREPLLATVTQKMYGLCFFCGKHRFNIEQINARFCRKCHRKIANVTKEYNKKGGMFGADPFWISMRKKHGKDWKEIMNKNLGNRR