NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315334_10229947

Scaffold Ga0315334_10229947


Overview

Basic Information
Taxon OID3300032360 Open in IMG/M
Scaffold IDGa0315334_10229947 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1517
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F060053Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0315334_102299471F060053GGAGMAFGLIPAGTITRETIISTRRIPVAASESISKGQVCELVGGYLKKSPTTATVDVNHFVALETIDNSSGSAGDLSAPVAVSGHYVTVVADGVIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIISKDASTPFQETFTDNSDFPPVACADGDIIEIYLGL
Ga0315334_102299472F006550GAGGMQARINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYNTHFDAVKTAKDKLGTSYFHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRSTFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVLAITETNTAQAASAAWDTFVTSTDRSTGDPTVDIGIASLNIEGSGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELVGIPGIGLVLDNGIKQG
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