Scaffold Ga0315334_10028125

Overview

Basic Information

• Taxon OID: 3300032360
• Scaffold ID: Ga0315334_10028125
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3899
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014127	Metagenome	265	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315334_100281251	F014127	GGA	MLEQVNNTLGRIEILGDKTSWDFGFMESLRDQLQQGRTLSDKQEVYYQQILGRWSDEAIKSRADFTNSWDEEREAKFLIALQYYHKTGYYGNIVYKYLTTAGVRCAGAPSEKEYNKLVENKYAAGVIRNIQSEPKFLAGGTAVFRTGAQAKRSIKGKTCVVLKYGDAEHVTSHAKGAKPIQVLPIGSSEPCWTEERWLKKAKKRK
Ga0315334_100281259	F077179	GGAGG	VKINDYKPGDLIVFFHGPSRFEAAPENIGWIVRRDFDDPSEPAVLVGFPHRPSNLLHYYDVELREWEKAGTIEVKRG