Scaffold Ga0308414

Basic Information
Taxon OID	3300032356 Open in IMG/M
Scaffold ID	Ga0308414_1002712 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11510
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11510

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062487	Metagenome / Metatranscriptome	130	N
F079732	Metagenome / Metatranscriptome	115	N
F091520	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308414_100271211	F079732	AGGAGG	MPLMDAARMIETYITDFGTEAKNLGIKILDGYADKLGNPLQGGGANQDAEYAYRVAENPCPSGNLFKPRALIATFEDGTKVRFPIGSRSNLVKRAKQLLANGAICIDYEGEYWPYVPSTLILNTRYGTQPLGGFTNDGSKTVGVFDYQSDILGTVVQPFAIESAPPILVVTATACLSNVVYGSGFCTGVRSLNIKARRFRGKGLVQGLPLGSGRKTYSRDIKMSSLNPTNCGAANAPNYQCLSYIGESIKNLHLLLPAS
Ga0308414_100271212	F091520	N/A	MASYIGNYLNDVGIQYRNIVLNTYFYDNGNRTSTTYDRDEMYLPTVFKSSTTRLSDKRATCQIEYSTLRVAQCYISDNVYYEIPCPFQGGTSEFTAFFNELNNNSMFRLVNLRGESIPYGYYLVLFSITR
Ga0308414_10027128	F062487	N/A	MPIWSGIVENVDVSNMVTLLSREDRFALGINNYPRSIIWSAMMLLRANKVLNQSPTYPNAIRFGANRTTILIEAAFPYDRDVFTVTGGDFISAIIPITGLSPYNGVLPIPPAEPVFLELPNPDDSRLNSLEKFLVWCCMQYKVGLNRFTNLGDNISVLFFDEQNTGNYPTLRVRVNLPYSYTTYCCTGSIVRAAYELFIDNPCGSGVLSIDGRVILFDTNVLVDLGLIP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308414_1002712

Overview

Ecosystem & Geography

Associated Families

Sequences