Scaffold Ga0325403_1028929

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1028929
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4698
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005406	Metagenome	401	Y
F015421	Metagenome	254	Y
F017855	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_10289291	F017855	N/A	CSNYDVSNDVFGRQEDKDFHQVNMWSPTQQLVKNSIVLTFSL
Ga0325403_10289292	F015421	N/A	MCMRVWSCTLSGKICRVYSSFLENMVEEDNQSLHNENNRVKTLKNHMKPIRTSAPSCIVFPPNASHFNFKSDII
Ga0325403_10289295	F005406	N/A	MDQAKSVITLRSGKVIEKPILEPCEKYDESISEGKEGVESEHCKEKTDSSSALLFPHAMT