Scaffold Ga0325403_1011861

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1011861
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8251
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005406	Metagenome	401	Y
F006830	Metagenome	363	Y
F030302	Metagenome	185	Y
F040409	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_101186113	F006830	N/A	MDTILEKFKKYFPALPPNAIAKIYRARCARLRLLMNHGIPENIRWLIEAKV
Ga0325403_101186114	F030302	N/A	MPGIGKSTFAKKHHAKRLKVCHRCAKWTCNAQCCSLGMISINREDKIQFIKDDLSKGSLDNLLLTLETHPSGDVHRAIHDLWPQFYKEHARYSLGNLTKKDPAYQFLRKLDGKPIPDL
Ga0325403_10118612	F005406	GGA	MDQVKSVITFCSGKVIEKPFLEPCEKDDELISEGKEGVESEHCKEKTDSPLTLPFPHAMTKQRKVNHNSEIFETIKQVMINIPLLDVIK
Ga0325403_10118615	F040409	AGG	MLKIFISNVMFPKDSLISPFLQLINALKVARNGHPKITGNELHSLTGCVSKTIKFIG