Scaffold Ga0325403_1003747

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1003747
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13963
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000510	Metagenome	1067	Y
F012842	Metagenome	277	Y
F037802	Metagenome	167	Y
F072898	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_10037473	F000510	N/A	MICNWGGGWTLSRLKQKKIENYQTKFNKIRKLSREQTLVASTHPPIEIKTDHGNKTSIYILNIYLFLTLVS
Ga0325403_10037477	F012842	N/A	MIVHRCTRIHLKDCGGWIIVMGHRVLLITQHLFREIIVQAVLGVHAGGVKIKIFFIQM
Ga0325403_10037478	F072898	N/A	MVAEGENRQQRRLSRSVFSQIFSSLDISQTGTDIETPYGDNVHDMDENNIFEYRADPTMEGGVIAVS
Ga0325403_10037479	F037802	N/A	MLCVNGKVDESGQIRLLTFGENLSRRMRELGSSFFIVMVVLDVS