Scaffold Ga0325403_1003604

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1003604
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14178
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016904	Metagenome	243	Y
F030302	Metagenome	185	Y
F083464	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_100360410	F030302	N/A	MPRTGKNTFAKKRRAKQLKMYHRCARWTCDAQCRSLGMVSINREDKIQFIKDGLSKESLDNLLLTLEMHPSGDVHREIHDFLLHFHKEHDRLSLGNLTKKDLVCQFLRKLDEKLIPDP
Ga0325403_100360411	F016904	N/A	MLLIKPKDTKFHKRRLKSNLSFLRLSIVDQFIVEGSITGMKDCSWSINCSAVAAKIMIYRAEDVRNFCSTA
Ga0325403_10036044	F083464	N/A	MQIRIIIKHKYSSSYQKQISNYHEERREGVLVSIFTDQERNTKFQEPVQD