Scaffold Ga0325403_1003521

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1003521
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14320
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (54.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046103	Metagenome	151	Y
F079394	Metagenome	116	Y
F088134	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_100352121	F079394	AGGA	MDWLSVLKTKPKGRVKLVQDENEDTSVRDEVFQISELVEPYRFAPSINLEENLNFRVFDDSLVDVDAEE
Ga0325403_100352124	F046103	AGGAG	LRERYGDDPLTHPEFDPYLWMEVGASGGPDKNRVYGLSNTMGENLWAACNVSIVGSSQSVLSTQSKEFVALQQHTAQLTEKYDHLSVEYAQQK
Ga0325403_10035213	F088134	N/A	MDRKLRNRPTKFMNSGRPKSVIFKFKIWPQKRSQNLFCNPVQTLLRILPIAGVLEGKMKLQIPTFMKTTCSNSDFNNNISSRQKLEGYPLRPPEALLSILAIS