Scaffold Ga0310345_10012742

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10012742
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7074
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042932	Metagenome / Metatranscriptome	157	N
F051977	Metagenome / Metatranscriptome	143	Y
F105353	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100127421	F042932	N/A	MADEQIVDQEEITKSDEEQDSYENTVAKSIDTLADVVQSIAESQQGVEKAVSEVIDRVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRNKNPPKKDPAGLKMQEKPVNKAEVEPQEVVETYEPEMVQKSEHSFSTETPRPSSAPETLEKSFTKDFSPILKDARENGYEGLSIVAQNILSGKYYKPTPEEVGGF
Ga0310345_100127426	F105353	N/A	MFVNQIMKKMNLQKKTCQCGKRLYGYGDGVHEIWLCYVCGKFIGTAGGDTMFGLMAKAAPDLIMRMIHEKILTPIEHKKHGTDRRNKTFGR
Ga0310345_100127427	F051977	N/A	MGTSIYVYETEKEYLQQYHRIDKEVMFSAPILDIFMKEDKKLWVVTKITKNKERPQLGRSIVHFVNGTVFDYSDGKERPILKNSVVFNPKKGRVEFFPKKLRDAELWIKVDRFYGMPPNKKV