Scaffold Ga0310345_10011197

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10011197
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7570
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007121	Metagenome / Metatranscriptome	357	Y
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y
F012162	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1001119711	F010942	AGTAGG	MPDQSRESEKQILTVQKDIEHLKYVIDELEKECEFVKKHFTIKNSERLDEIKTIHGRIDQHLQTDLDFHENVRKKISDRFQIFDERLRQLDRWKWATWGALIVIGALCGYFVPLPKLTS
Ga0310345_1001119714	F012162	AGGGGG	MLLTEEQTKYYLNDMIQHYREKEINTVGSFSWQRSEAEYRRKTFEDMRIVLFGDDDYGYTRQQKQA
Ga0310345_100111975	F007121	AGAAG	MLKTFFLTIFLLFGFTTSAQGDWYIVLEDTLREPTLDKLIDWVPEEVPRTVSFYFDTDEDGKFDLKIAYSLIEAYACKNNCVRRIIDKGDHWILPAPGVNYYVIKKWIVYRYVDDKAGEWRGVNKTQQWVYEYPYNDDWLREKFYPLWPKERMK
Ga0310345_100111979	F009987	GGAGG	MIGSIIGNALGLGLKIMDKMEKNSDKHSFEEFKARKKEMDNSLADGDVEGVDSMFEYLAERARGGNTGRKD