Scaffold Ga0316202_10054746

Overview

Basic Information

• Taxon OID: 3300032277
• Scaffold ID: Ga0316202_10054746
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1868
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F008684	Metagenome	329	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_100547461	F008684	GAGG	MTDKNFDTACQLADDLYFKFIDSLHDDIANEYIVADEDNVGSTKNTEKGSELYWEIESSIKNALDKQTESEE
Ga0316202_100547463	F002768	AGG	MTTKTSWWKLTIEDYPNYKPNDIDLEHIAEMIKQGYDQGELIQEDESEE