Scaffold Ga0316203_1009966

Overview

Basic Information

• Taxon OID: 3300032274
• Scaffold ID: Ga0316203_1009966
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2961
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F030153	Metagenome / Metatranscriptome	186	Y
F072288	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316203_10099662	F030153	AGGAGG	MSLIVDFTKIDEVAKGELWQYQEMIGYYMMAIGMGEITEKNHLEVYARLVLLQASTLDDSKPWITLRMVKGLINARFNIAFESKAKFSSRMIKATLREVERQEAKEVQDVA
Ga0316203_10099663	F072288	GGAGG	MKKEDNPFLNGDVVIDPYPKTKRLKMCEKLEENMRDTAYSKPSTGEMHLYNYMVQSLVDRGLADSRAVKIVRALETNNMSSLAFAVCACDEWNFPHLLKIEPRIFHMLLQYRDDPVLIQRLEEVMK
Ga0316203_10099664	F009045	GGAG	MNKLSENFTPSRTSRGNRHIVKGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVKGEVIDRVTVDSWEGEGLNEFALRTESIILGGVK