NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306920_100705977

Scaffold Ga0306920_100705977


Overview

Basic Information
Taxon OID3300032261 Open in IMG/M
Scaffold IDGa0306920_100705977 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1486
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010786Metagenome299Y
F022624Metagenome213N

Sequences

Protein IDFamilyRBSSequence
Ga0306920_1007059771F022624N/AMDKQPSTLLSPEGDAELKRLYADLAHARRRATAFLRTSGMTSAAFLRADREVTRIVKRIKEIRGLTGKHWTAL
Ga0306920_1007059774F010786N/AMRTRGDMLSFAIAFALMGARKLVRGLRQELTEEERYRVADDVVHQLKQYGDPWRLSEDLPPPGKARRSKACSCEQAI

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