Scaffold Ga0306920_100132081

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306920_100132081

Scaffold Ga0306920_100132081

Overview

Basic Information
Taxon OID	3300032261 Open in IMG/M
Scaffold ID	Ga0306920_100132081 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3715
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013218	Metagenome / Metatranscriptome	273	Y
F024377	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306920_1001320811	F024377	N/A	VFGENWSKTDEETWRILQARSELKNDPDLGRRNMGITVVIL
Ga0306920_1001320812	F013218	AGGA	MANLLSSGLEKVSLNKRYIFWFWLLNLTLAEFGTAGFRRAAHAILDRNLYAERLVRGFDLGVFLELLSKPEFGTLNSMTYPSLYFGFVFFVATALFLPGIFSGYASRYRLPREEFFRACGRNLWRFIRIMIIAGVIMGIIAGVLFSANDAMVKKADESTNEKLSFELEMVGLGVIFLVMTALRIWFDLAEVDAVLNDQRAIRKSIAAAFRHTFRSLARLFTSYLVVTIAAAIMLVAGLWLWMKLIAPENVFGAFAIGQVTLLLLLIPRFWQRGIAVSYWQQWMLAPLAPTAVVGSSPIPISSAPESPAAIDSLPANAPPIEPLQS

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