Scaffold Ga0316190_10004576

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316190_10004576

Scaffold Ga0316190_10004576

Overview

Basic Information
Taxon OID	3300032259 Open in IMG/M
Scaffold ID	Ga0316190_10004576 Open in IMG/M
Source Dataset Name	Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10085
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Maine
Coordinates	Lat. (^o)	43.9948	Long. (^o)	-69.6486	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087211	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316190_1000457610	F087211	N/A	MGEMIHVLKVTANALEAEGADAEIRHSLIVFVNCEDEGGAYAPADAHLRQTGWQNVELVNCKAVPPEAIEKLDESLQNAYREAEAHNVAAVLLKSS

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