NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316191_10230535

Scaffold Ga0316191_10230535


Overview

Basic Information
Taxon OID3300032258 Open in IMG/M
Scaffold IDGa0316191_10230535 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1350
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.9948Long. (o)-69.6486Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072360Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0316191_102305352F072360GGAMLHSGMNPNIHILGGFSRKALYLALILLIGFSFSAGGVLANSCQGGPDCLNCAAAAHPHIPGMDVEMVNPGCQSAEQNSSCGFETGRSADEFDRTAAVVKSDTHPYPGIFSAASDESDQADLYREFITQFQSPDRSELTPIYLLNLSLLC

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