NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10531089

Scaffold Ga0315271_10531089


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10531089 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006135Metagenome / Metatranscriptome380N
F064717Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0315271_105310891F006135N/AMSVRIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHEGDIDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTIAYSGVQSTPMKSE
Ga0315271_105310892F064717AGGAGMAKMLGPVPAFKDPDPMVYRRWEAVPAKIRESILNDNPTCTYRELAKKYGISHSCVWNIKNKQPNKQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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