Scaffold Ga0315271_10147274

Overview

Basic Information

• Taxon OID: 3300032256
• Scaffold ID: Ga0315271_10147274
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1842
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023295	Metagenome / Metatranscriptome	210	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315271_101472741	F048257	GGA	MTAFPSSVAARQCLRGEGCSESVYWVLRRTLLINSGMRFAGERKNTLKKSFYGALAVQAFVMAWTATHMDEPVASLPSGETAIGSNSFEILGTYLTRSVIVGTGLWLGGERKNLLRNTLAGTAMIQATVLLWAQGKEL
Ga0315271_101472742	F063343	N/A	MNYLILLGILGLFVLGQKTRPNWVSEIKSTLIKLMVSGADRRLFREFTQSTFSWIRNPASWVRVFNWTGYSAGINGLGGVGGGTLISRRHVLLANHVPYPNKPNGPFDIFFVNASSRTFNYKVANVQQVGDTDIAIGTLDRDADPSLIVYKVLPDNWAEYIANKVIQPTATFIAVGLTAPTQAFVLPVLYSGQDRKVSTADVVSILSGLAGVNIPAFEPARAFGDGVRGGDSGNPIFAMLGDELVLLGAWYTGPDRGYTVGTFPWLITHRGAIEKIMGQKLQVANMSGLNRIA
Ga0315271_101472743	F023295	N/A	VKLLHKAYTQAKLLLISRRSLVLLSMLQSMGCATRVILVPEGQPVQLAEPIRAKVYAFDSTGKLVPSSNKVVLPAGWYVLPRK