Scaffold Ga0316208_1058848

Overview

Basic Information

• Taxon OID: 3300032254
• Scaffold ID: Ga0316208_1058848
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1103
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034554	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316208_10588481	F034554	N/A	TAITGVSPLRYFTIADSVTAAADLSQIDISDYELGITDAQSLETKLIVNYKPHPAENQYLKQYDYPATFSGSAHQSIFGDENIQKQEVNLDFLFDAVDEVSGSRNSSWINFRESLFGNYKTTVNATLVNPEKYAMLQVGDAIDFGEETFGEIGSPFDEISDTFDSFIAMPTRLFKDAWSGKKFIITNLKRTLGKVTIQTREV