NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316196_10020287

Scaffold Ga0316196_10020287


Overview

Basic Information
Taxon OID3300032252 Open in IMG/M
Scaffold IDGa0316196_10020287 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Maine, United States - Eddy sediment 2 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3118
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.9948Long. (o)-69.6486Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057384Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0316196_100202874F057384AGGAGGMTHTRMDEAAINASLDACLHGAREGDSNQARRLHELLDLMLMERETEDGKLWLTDHGKMLLADMHRQLSRVEGSGHRLHETVLDAVQLKPRQGHWRDTCEYLHDLRVAIAVANELCEQRTGGGKANVSKAAKIVADRGEFELEAGRIREVYEEVASTLGGFREIAHC

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