Scaffold Ga0316196_10020287

Overview

Basic Information

• Taxon OID: 3300032252
• Scaffold ID: Ga0316196_10020287
• Source Dataset Name: Coastal sediment microbial communities from Maine, United States - Eddy sediment 2 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3118
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.9948
  • Long. (^o): -69.6486
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057384	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316196_100202874	F057384	AGGAGG	MTHTRMDEAAINASLDACLHGAREGDSNQARRLHELLDLMLMERETEDGKLWLTDHGKMLLADMHRQLSRVEGSGHRLHETVLDAVQLKPRQGHWRDTCEYLHDLRVAIAVANELCEQRTGGGKANVSKAAKIVADRGEFELEAGRIREVYEEVASTLGGFREIAHC