Scaffold Ga0307472_100019928

Overview

Basic Information

• Taxon OID: 3300032205
• Scaffold ID: Ga0307472_100019928
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3648
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013033	Metagenome / Metatranscriptome	275	Y
F068521	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307472_1000199282	F068521	AGGAGG	MIIPHDLLNDFRSSPELSARRGRVMDRGIRFVVALLGFGLVVAGALLWAPTVEAQGEPILSFEGRVTSVSPREMLVAAERGGVIIDVVMVDLVRIPQSETRQIAQDDIVVVIGFIRRPGHKVIATSVQPVSRWFPTTPGWAPQVP
Ga0307472_1000199283	F013033	AGGAG	MRVRVLVIGALLGVLAATSAVPAQSLSPNFPGWERYFSVSWEPFERRGEPYLSGYIVNSYGVTATRVQLLVDSLDSSGQIVAQQVEWLGGSNLPGFATTYFEVPIRKQAARYRVSVFAFDFLQSARIESP