Scaffold Ga0307471_100212596

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307471_100212596

Scaffold Ga0307471_100212596

Overview

Basic Information
Taxon OID	3300032180 Open in IMG/M
Scaffold ID	Ga0307471_100212596 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1948
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001239	Metagenome / Metatranscriptome	740	Y
F004912	Metagenome / Metatranscriptome	419	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_1002125962	F001239	N/A	LASLIFGCGGQLSSDEAGLLDAVAFVTGGQEEGAIPQGFETRWRRTVHKREIEYQSIGPYAGFGQANDPHRDSRHVRIGVTITSPTKCVFKTVVTTEYSRGAREGFGDATSEVATLDFNKVRGFDIEDGDSPSVVIEGTAWMCKQGGCQDIVKIGISAPRQEEARAIESKRHAIDFIKKACPRPFLVDWK
Ga0307471_1002125963	F004912	GAG	MVFGQDPTPGKYSCYIANIVGLQTNSQTGNRFAGSIVLAERQQKFFVTIEDNKQLPEDRCFSADALDDLKRLRRGEKPGTNSKTQFLDPSMFFTACQAQFRLSTNGGPIDSLYHSDNLNIFRDQFSQFWLRDGLNYVWQFVDLKGNAYLAEGGCEKIN

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