NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100000235

Scaffold Ga0307471_100000235


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100000235 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27898
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (69.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F015239Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1000002353F000781N/AMLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPSPIASITVQASNGWFDISIVDPSDSRPGLFYFAESDVTPAFSAPRVYFMGASRNLYVQLGNQTLFWRAYSQYIGSQPSAPVTFGSPPVAVIGGGSSGPAPLPSSGSGAFPNGVLRGANGFGIHPGSRIPRQSVL
Ga0307471_10000023530F015239GGAGGMKNLDSVLAAYLAGWAIFFVYYISVSQRMSSLREEVERLKAQLNKGKP
Ga0307471_1000002356F002853GAGGMSRAQDYTRQLTDQQLASLNSLNQQFLGQQQQVGNLLLPQYQSILNNPGLSPADKAAVTGQSQGALASAFDALQQSAQNRLARTRNSAGFGELIDELARQKGIAEAGQTQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRNNASRNSGGFFSSLGSGLGSTLAALPGAFL
Ga0307471_1000002359F000624N/AMPSHWYGILAAAFSVSVQFILFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYDALHKIAARQGITLDETPLVRFVDLNGHSHRRR
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