NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315276_10104829

Scaffold Ga0315276_10104829


Overview

Basic Information
Taxon OID3300032177 Open in IMG/M
Scaffold IDGa0315276_10104829 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2881
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010880Metagenome298Y
F014022Metagenome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0315276_101048293F010880AGGAMSYTLQKGTRSKILLVYALDATDMRSGKTGLNSRTPDSSAAYIREGEAIVRRTPLVEGKLGEHRAGSFVEVDSKLLSGVYQFGVPDEMLAAGAETVTLILKFPGAVLEPISIHLVAYDPQDSERLGMTALGPEGRINALRGAFPRLTENEFRNAG
Ga0315276_101048294F014022GAGMRDEQLGNIAQVAARSAQPYRRHIVGLSLQRSLFGLTAQAATTIGLPGLSSELDFPARLDENGDLFLDRSQVAALTKALLSWFTPETLELMHTRHAAACDALVDATENAARAAASLDGAPRKLSEDLANRMALVLAYGILSKFVPDVLLRALADAGDVEPPPFPETSAGAELMQNTFALYQACCALNYDPRRLQLEWPRVPAEVFQLVSEFCHRQTGFGPLAWDSPGYEDPNYVIRLLHSAFNEVDAEQVRRRLSFARRPSVARSSAGGSTKIAALRRVLGFWLDFLERETWYARRAFYFGMIPLLQQLVAGYRQKIPKFQPADLLFLDIRELVAGIADPAVIDARRHRYMENTEYLSLHGVDSSRLATMLGSS
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Institute for Fundamental Biomedical Research
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