Scaffold Ga0315276

Basic Information
Taxon OID	3300032177 Open in IMG/M
Scaffold ID	Ga0315276_10004049 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032177 Open in IMG/M

Scaffold ID

Ga0315276_10004049 Open in IMG/M

Source Dataset Name

Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13444
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

13444

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (16.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5099	Long. (^o)	-110.3566	Alt. (m)	Depth (m)	103
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5099

Long. (^o)

-110.3566

Alt. (m)

Depth (m)

103

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F027487	Metagenome / Metatranscriptome	194	N
F097170	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0315276_1000404915	F017989	N/A	MALTQPCFVNLTPDQQNFNLYESLKEIAGFEIPAYDQIDISYYGVTNNIATVQYLKDGVPVATLTLSYAVQPPTTNDANLTTVSIAYP
Ga0315276_1000404916	F027487	N/A	MACFTALDYRNKSYPFVQTIAAAAGIDPISYGCYDAASDASKLYQFYVGLATIGELTPVTENCFVQKTEDQQYFLTNEALAAALPPVG
Ga0315276_100040492	F097170	N/A	MPAEGSVFDGFTSVIAQDAATHPSYLPEMYVAESVNRTFRGGINRTRPSIRNINIVAGTGQPETIVNDIQNGNFQGAYPYRRTKYEAADGIVISVAGVIYFLKMVNNVAYAYKLPVADGWQWNDGSLMHTFFVQAEDQLYIQNGYQNPIAWNGDLSVNAVRLNPFNREMPIGTIMEYAFGRVFVSDKFNQIYASDIIFGAGLTDTKNTRRFTEITYWQLGGAFATPSMMGNITGMKVMPELGLNLRGQGQLVVLTGNGAFAMDVSIPRDQWNTTNIQRISLLGRGCTSPYLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSREVNKWVERDTPWLRQFASTMFYDNYLLSTVAPEIKRTTALGLHRYHRGIIALDLDQSASPAPDAQLSFRWNGLWTGIRPTQMVSALIVGQKRGFAFSFDKDNKNRLYEVTSQQTDDYGPNGTRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGLVESSAEFRADSNPCWSELKVSTTYGCNPCSPIATECVPQQGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKINLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWDYSIVT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315276_10004049

Overview

Ecosystem & Geography

Associated Families

Sequences