NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315268_10745185

Scaffold Ga0315268_10745185


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10745185 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078403Metagenome / Metatranscriptome116N
F085372Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_107451851F078403GAGGMTVDSSKFDAAMKQYLLSTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRISDYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSPKWKPLSKPPGYKAPKQTNAALVSLANQYGLP
Ga0315268_107451852F085372N/AQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDTGFIFLENTDRIALTFCKPKPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.