NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10555299

Scaffold Ga0315268_10555299


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10555299 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011281Metagenome / Metatranscriptome292Y
F020665Metagenome / Metatranscriptome222Y
F022371Metagenome / Metatranscriptome214Y
F043281Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_105552991F011281GAGGMSEFKQNVLTAAVDRYVLTPTQCMMLRQDAEVIGMKRATVMKKDGTTRRSFARSCSSCWVPMAPHYKWLYSIVNELTTAVNAEHYR
Ga0315268_105552992F020665AGGAMRKRKGKSIKLVKTEEYKAVKIFVDVDDDLYEALAEAGKQHILKDKLACFEYALNKALLELCEEVR
Ga0315268_105552993F022371AGGAGMLCLLELKDIVWVVGWFILYSWLILSIIYCAGFIILKLIDYIRKELDL
Ga0315268_105552995F043281N/AHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR

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