Scaffold Ga0315268_10555299

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10555299
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011281	Metagenome / Metatranscriptome	292	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F043281	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_105552991	F011281	GAGG	MSEFKQNVLTAAVDRYVLTPTQCMMLRQDAEVIGMKRATVMKKDGTTRRSFARSCSSCWVPMAPHYKWLYSIVNELTTAVNAEHYR
Ga0315268_105552992	F020665	AGGA	MRKRKGKSIKLVKTEEYKAVKIFVDVDDDLYEALAEAGKQHILKDKLACFEYALNKALLELCEEVR
Ga0315268_105552993	F022371	AGGAG	MLCLLELKDIVWVVGWFILYSWLILSIIYCAGFIILKLIDYIRKELDL
Ga0315268_105552995	F043281	N/A	HPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR