NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10212661

Scaffold Ga0315268_10212661


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10212661 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1852
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002843Metagenome / Metatranscriptome526Y
F034152Metagenome / Metatranscriptome175Y
F068565Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_102126612F002843N/AMIVPVNIVAVQVNQNNSLFVTTGIDYDNSGSIVGSEITDQYTLVPGDSLEGQPTEVVNIANALWTPAVVEAYKAANPVVEAVQPTE
Ga0315268_102126613F068565N/AMPLTERTIFSLCEVLPNTTLQVRLSDQIVDGEVVKASTFRRYCLAPGSDLTGQPEQVVAIAGAVWTPAAITAYNANLQPTIQ
Ga0315268_102126615F034152N/AFEMRLGLGLGLGAQQALGGAGGGADLPAIRRDVLLEDGYFNLLEDGYKIVITTGVSYYLLLEDNYKLLQEDSSKLIIENE
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