Scaffold Ga0315268_10204753

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10204753
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1889
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F037595	Metagenome	167	Y
F060701	Metagenome	132	N
F080878	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_102047531	F060701	N/A	MIVSFMRALPVEQVEKATDWMKAMPRSVRKTLRLTKSRQPNVNTHDGVDDYLAVDCRIDTYHTQNLEFLDREFGFDEFGDIDDEHEGLTITSAMSEVETFEYLTGYDII
Ga0315268_102047532	F080878	AGGAG	MGKVKVQYAPLGFVPEQEQQQETGRSMFLLLCNGKPLALYDHRDTADYEMHICIQGDMHEGHENKYRIKTMGVVTHSYEES
Ga0315268_102047533	F006894	AGGAG	MHWNCRIVNTKTENGGEDWFCLQEVYYNKDGEPYAYCNACTGSESMETLKDVWYMVNEAITLPPLQEEDFVKYEEDEE
Ga0315268_102047536	F037595	AGGAG	MGYRSDVAYTIRFTDDHDTNNEQSFYTFLLEAKANPKCQIAIAEVEIDHKKKAFTFVAESVKWYDNFPEVDSHMALVKQAEDWSCQVSEGKLHCTIGSMFVRIGEEANDIEERFNGDYDHEWMSVSRQVITDWT