Scaffold Ga0315268_10157647

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10157647
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2159
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016374	Metagenome / Metatranscriptome	247	Y
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F056408	Metagenome / Metatranscriptome	137	Y
F089835	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_101576472	F089835	AGGA	MRLSPLDERMNADIDALIAKLEAAKTSRTYLQRASLVGKIAEQCQSYEFYWEDKLLSLMD
Ga0315268_101576473	F056408	GGA	MQKRVKQLMAQTLDEKFSHTWSTMTPEDLEKFVKHFAELLIRDCADTAYRFDGLTLGQGYTVAKHLRKHFEVES
Ga0315268_101576474	F044299	GAGG	VNQISQYLVSIDRPPYVNGRRVGQATPCVSYGEPAWFISFLDGYMHASDPVFTDEDGLSGAPSIREYATNLGYEPCTN
Ga0315268_101576475	F030663	AGGA	MYELIFTFLIVTKAGLPGFHIERMSQFRELEDCEKNRTAMVVYMDRLVRENRMFPGVFECRKVQQ
Ga0315268_101576476	F016374	GGAG	MPKGTAMNKEITLTPAGGRFYRAMAFHWLTVAVIMPPLAVAMIAAILNPFWFRDSMFNFVERKINEFTRWRNNVKYRIYLGCDPVVWHTLKGDLK