NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10030089

Scaffold Ga0315268_10030089


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10030089 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5257
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F010673Metagenome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0315268_100300891F000922AGGMKPEQWTKAKSLYLAGKTWGAIASDLKLNQSTLLSKASREGLPAIRKEMRNTITSKENVSLESLSALVRSKLAADAASTLERIDSYSLDGIKDESTREQILGSVAKRSALVFGWSEGNESASVSINLLGSMPDRFAEVVVHGDSAGATVR
Ga0315268_100300898F010673N/AMNPKLIPILERIICRETILLSFHADNLPQAALAYVRQHYLNDNFLWLAPDEQDLIEELPPFADNLSESIRPGGGIGNPDSSVYHLFDDGSLWLKTNAYSSIWADATDYAVEVLLPQMSLSRMDADLLRAIEMDDAVQSVRADFYSSFAQVLHRDCGIPYCDAGEHWNAYARQLGYGAREEAELGGSESGRAEGLRFTESFTINA
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