Scaffold Ga0315283_10024425

Overview

Basic Information

• Taxon OID: 3300032164
• Scaffold ID: Ga0315283_10024425
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5847
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051827	Metagenome	143	N
F063278	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315283_1002442512	F063278	N/A	MKERYLVIGFQPPTRRISLDSEWAESATDAMKAVAGMRKAADVLLAWTPGQMRLMADLLAAMTPQQIAFNRRTAELEERAFRASQTAPPQFRTAGPQRQPFLVISYDPVTEAVHLDPELNDSSDAALRSVAGIRGRAHVILAFTPEQLREMAANLEGLTAEQMARNRRAAEQEEKTFYAELVERQ
Ga0315283_100244258	F051827	N/A	VKSQVYLVQDCGGVSLEVVAGPFDSEAAAEIEEAIIQRVKADSGLRDGGDDTLHTLEIAPERKPEFGGFCGGYMENIRWVAAGCPPPGKPDTWDQPDFSLTTKEKRK