NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10087876

Scaffold Ga0311301_10087876


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10087876 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6262
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016631Metagenome245Y
F040434Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_100878761F040434N/AGLVILLAIYAPALLLMYVVIWLTSPFKNKVLQVSAGFGVALAVTHIAGVLFEAIAIAGIFAIDLVTGQVVARLRKRLNARAQKGAH
Ga0311301_100878764F016631GGAGGVKLLRAFALAVAETVLHEAGRIALGLAMGVAKKAFATPNPETIGLHQTSIARSLQRKSVDGALLAGPRDKEWAKFTLKKCLPTDQRPRTLAVENQPHSVDDFDGVIKEGYGKGKKRLIYSGNGVIKVGGSRQLAKINIHEHDAERAGLHYDFVAEGIDPHTESFEVNIANGLFKGRYAFRQAFEKNRYLVVRMKDESVLVAKPDIHLKSPEFLKSLRQSDRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGKPYYDKLPAIEDLRNRSPVWLARRLFPGPEQEGTVLRGELHHPDGAARVGGILNALPEKSFRIQQERGAVEFYAWDIAKFKGRDVSQMPYGQRRELYEAAIAEIRLFNRHLQVVPIMPEGGDPEEFYRTIIHDARGLPWSEGVVVKYRDSVDQWFKVKANDTLDVKVVRCIEGAGKFAGSLGAMVVEGPTGVESEIGSFQLTNEQRRWIWEHRQVLTGQIAEVRALTVNESGAIRAVSARI
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