Scaffold Ga0311301_10023556

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10023556
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16913
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001776	Metagenome / Metatranscriptome	636	Y
F008260	Metagenome / Metatranscriptome	336	Y
F017190	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1002355619	F008260	GGAGG	MGRAASGRLEGDAGELDELRFHWGSAYDIAVDGAVFTARRLDGKGVPLTDPLPEGLRLRILADYEAMPVPRDLP
Ga0311301_1002355621	F001776	GGAGG	MFREDSPRDLDRARAAVAAWRDQNPAGTAEQLVADLGGQFRPDYGPVLRAVLFLADRHRARDITGATGDAVQGRWR
Ga0311301_1002355622	F017190	GGCGG	MGGGHARPRRAALRLAQDEPDQVPRLLAFRAAHPDVIVGAGEFGTWQARIPEPNGETVVNRYRLVELLDKLDELTGPHDGQPGGEPG