Scaffold Ga0311301_10016657

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10016657
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21607
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025536	Metagenome / Metatranscriptome	201	Y
F036816	Metagenome / Metatranscriptome	169	Y
F042486	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1001665719	F025536	AGGTGG	MSAPAPALAKEPIRTVAMRLADPARTLAYLSLVFGLLLVVLPVSFPRVIVENWENGRLTPIMILFTVSLNLGLYLKVAHRRSAKPGKLASACLGSVPVFLLAGLNLLLQATIAHTLSGNISNASARIDEEILAHTYFALIAAIFGPFLLIRLGQQFRKAEP
Ga0311301_100166572	F036816	N/A	MLLIVPVSLLGQTGLSQTGSAQAGQAQTGAAVLRTQGGVWVNGYEAQDYSAVFPGDLLETKVGSPATLNTEGSTVLIQPESVAKLQNNLLELDHDSVSVGTSKSFKVRVNCITVVPVLNEWTQYDVTNLNRTIQVAARKNDVNVERELDHGKPSPGTEGSRGSTVHENEQKGFDESEICGPPARPAGAGTSVNPKWIAAGAAGAGVLVCVLLCRGTPTKPPISPWAP
Ga0311301_1001665720	F042486	N/A	MVALNIVGIPAEWMAAKWLLWIILYLTVGIVVPWAMTRAWAHQHESTIQPGLKQLFQHGELGLIGLMLAISVIWDLQKSQYTSDTIALGSVFLAMTGIMAGSVWVEGYCRRGTGTRFTIERAWRDSRSLALLVFSLAIVTEILLDRFAKVAAQ