Basic Information | |
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Taxon OID | 3300032160 Open in IMG/M |
Scaffold ID | Ga0311301_10001717 Open in IMG/M |
Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 84110 |
Total Scaffold Genes | 85 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 68 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009185 | Metagenome / Metatranscriptome | 322 | Y |
F058503 | Metagenome / Metatranscriptome | 135 | Y |
F073323 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0311301_1000171723 | F058503 | GAGG | VIPTTENGFEQRSQPSRAIQAERGEVSFEERLEQAMLIKEQLDRVRGWRERLSPKFRRACSAGQLLFQVVGAAGYAGYFASMHTFMRLVSAALMAGTWYVIYRIKGPAQP |
Ga0311301_100017173 | F009185 | GGAGG | VIFFGMAVLVEMHHTRCVPAVRAEIAAIIEHALADRHGDWRVSIIGSQANDRWEMKITGPNAFERSYTLEGSAGEHQPEVIRMILAKMVPRKLA |
Ga0311301_1000171750 | F073323 | AGAAGG | MLDPQRWLVEREIMRRRFPWISPFETANGYVGFFGELRGPKSGRLYQVLLKIPARLYPETEPPLYLDPHLGNNWRQDAVNHDPRGRLCYDRPGQSKWNAARSTFANCIMVALDYLAVNGA |
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