Scaffold Ga0311301_10000118

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10000118
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 260669
• Total Scaffold Genes: 249
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 186 (74.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025429	Metagenome / Metatranscriptome	201	Y
F044216	Metagenome / Metatranscriptome	155	Y
F081650	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_10000118116	F044216	N/A	MNKLSSFLSVSALSLVCAGVVMAQNPPQRITLVMNGRTADEAVVQIDGHSYLDVETLARIMNATVSFEPGRVILTGPAAETVAEPARIAQGLSKEFARAGIAQLAEMREWKGAISSAIRSGVAGGNWLAPLLHEHRARAAESLSQASVAAKTESDKKALQLLKSEFTNLGEWDSQVQATIQSLNAEQNLNPPAAQSDPLLAKISECGSFLNAMLVGGDFADSPSCH
Ga0311301_10000118120	F081650	GGA	LEKEAARAHEASIELEALVPLLTADKPRQLAQLQVKASRQQAEELRELAQRVKES
Ga0311301_10000118166	F025429	N/A	MNVNSARQASAQYLKLALAGLAFLLLISPGDLHAQGCPMCYQSAAASGARLIQALKGGIVVLIIPPLLMTGAFARFVYRRRNLCNEELEEDREA