NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315912_10769669

Scaffold Ga0315912_10769669


Overview

Basic Information
Taxon OID3300032157 Open in IMG/M
Scaffold IDGa0315912_10769669 Open in IMG/M
Source Dataset NameGarden soil microbial communities collected in Santa Monica, California, United States - V. faba soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053376Metagenome / Metatranscriptome141Y
F082862Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0315912_107696691F053376N/AMLTLRTLETGAGEPYRFEVIGLPTGRGAMLARLSGVWKILKIERGKSYGWTGSFVSADDALTSLAGDV
Ga0315912_107696692F082862N/AWYPIDGLVAVGAIVLVNLAGWLALGAGADQERLRAGLFAQAATVYRETTDLTTSVKTLMLTPRGGVLQPRDSSDKILTDYSDYRNSLNGLAQLVRVWDRVVLTGTLDTGLISSERIQTHDDLLNSIRARTLTLYRQYAQIDRRLTDLSCRSEWFARDPSQSREDRLLTLPAVQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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